PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PDK_30s774131g009
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Coryphoideae; Phoeniceae; Phoenix
Family HSF
Protein Properties Length: 277aa    MW: 32021.3 Da    PI: 7.5247
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PDK_30s774131g009genomePDKView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind113.41.5e-35251162102
                        HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXX CS
       HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkel 93 
                        Fl+k+y++++d+ +++++sw e++++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ F+kg+k+l
  PDK_30s774131g009  25 FLTKTYQLVDDPCTDHIVSWGEEETTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVADR---------WEFANEFFRKGEKHL 107
                        9****************************************************************999.........*************** PP

                        XXXXXXXXX CS
       HSF_DNA-bind  94 lekikrkks 102
                        l++i+r+ks
  PDK_30s774131g009 108 LTEIHRRKS 116
                        *******98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.2E-3715109IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.4E-5721114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467854.08E-3322114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.4E-192548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.0E-3125114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-196375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.4E-197688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MAFLMGRCGE MMVSVDSHKP VPAPFLTKTY QLVDDPCTDH IVSWGEEETT FVVWRPPEFA  60
RDLLPNYFKH NNFSSFVRQL NTYGFRKIVA DRWEFANEFF RKGEKHLLTE IHRRKSPQVP  120
HHYHHNHQHY HESPPPFQGP DEMTSWIEPP LPLPSGDAEF LSALSEDNQR LRRKNSLLLS  180
ELSHMKKLYN DIIYFIQNHV TSTPPDRRLV NPRPGRLIEL APDDQLQSPS ELQKGSKNRF  240
SATMPGDSDS TVKLFGVSIH GKKRLHTETA CDGNVII
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B8e-222111426129Heat shock factor protein 1
5d5v_B8e-222111426129Heat shock factor protein 1
5d5v_D8e-222111426129Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008786852.10.0PREDICTED: heat stress transcription factor B-4b-like
SwissprotQ7XHZ08e-98HFB4B_ORYSJ; Heat stress transcription factor B-4b
TrEMBLM0RR121e-118M0RR12_MUSAM; Uncharacterized protein
TrEMBLB9GG641e-118B9GG64_POPTR; Uncharacterized protein
STRINGPOPTR_0001s28040.11e-117(Populus trichocarpa)
STRINGGSMUA_Achr11P10320_0011e-117(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP12137394
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.12e-87heat shock transcription factor B4